U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    GH9B16 glycosyl hydrolase 9B16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830054, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GH9B16
    Official Full Name
    glycosyl hydrolase 9B16
    Primary source
    TAIR:AT4G38990
    Locus tag
    AT4G38990
    See related
    Araport:AT4G38990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B16; F19H22.90; F19H22_90; glycosyl hydrolase 9B16
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GH9B16 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (18168676..18170949, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fructose-bisphosphate aldolase 2 Neighboring gene uncharacterized protein Neighboring gene glycosyl hydrolase 9B17 Neighboring gene glycosyl hydrolase 9B18

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    glycosyl hydrolase 9B16
    NP_195610.3
    • glycosyl hydrolase 9B16 (GH9B16); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B17 (TAIR:AT4G39000.1); Has 1522 Blast hits to 1511 proteins in 198 species: Archae - 2; Bacteria - 400; Metazoa - 176; Fungi - 17; Plants - 897; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18168676..18170949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342521.1 → NP_001329141.1  glycosyl hydrolase 9B16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JUJ7, Q9SVJ4
      UniProtKB/TrEMBL
      A0A5S9Y0A3

    2. NM_120059.3 → NP_195610.3  glycosyl hydrolase 9B16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195610.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SVJ4
      Conserved Domains (1) summary
      cl02959
      Location:1 → 335
      Glyco_hydro_9; Glycosyl hydrolase family 9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVJ4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.