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    PLC1 phospholipase C1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830010, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLC1
    Official Full Name
    phospholipase C1
    Primary source
    TAIR:AT4G38530
    Locus tag
    AT4G38530
    See related
    Araport:AT4G38530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPLC1; ATPLC3; Phosphoinositide-Specific Phospholipase C Isoform 3; phospholipase C1; PLC3
    Summary
    Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
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    Genomic context

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    See PLC1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (18020567..18022985)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Sept9 (DUF616) Neighboring gene ATPase, V1 complex, subunit B protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA Neighboring gene phospholipase-like protein (PEARLI 4) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure. Zhang Q, et al. Plant Cell Physiol, 2018 Mar 1. PMID 29309666
    2. The role of AtPLC3 and AtPLC9 in thermotolerance in Arabidopsis. Ren H, et al. Plant Signal Behav, 2017 Oct 3. PMID 27070271, Free PMC Article
    3. Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 3 (AtPLC3) and AtPLC9 have an additive effect on thermotolerance. Gao K, et al. Plant Cell Physiol, 2014 Nov. PMID 25149227
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Overexpression of PLC3 had no effect on root system architecture or seed germination, but increased the plant's tolerance to drought.[PLC3]
      Title: Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure.
    2. Similar expression patterns and phenotypes suggested that AtPLC3 and AtPLC9 may regulate the thermotolerance of Arabidopsis by the same mechanisms.
      Title: The role of AtPLC3 and AtPLC9 in thermotolerance in Arabidopsis.
    3. At4g38530 and Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 9 have an additive effect on thermotolerance.
      Title: Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 3 (AtPLC3) and AtPLC9 have an additive effect on thermotolerance.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_120014.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol phospholipase C activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase C1
    NP_195565.2
    • phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18020567..18022985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120014.5 → NP_195565.2  phospholipase C1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195565.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38811, Q56W08, Q9SZN3
      UniProtKB/TrEMBL
      A0A178UYI1, A0A5S9Y036
      Conserved Domains (1) summary
      PLN02228
      Location:1 → 564
      PLN02228; Phosphoinositide phospholipase C
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q56W08.1

    Gene LinkOut

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