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    RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829531, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RSL2
    Official Full Name
    ROOT HAIR DEFECTIVE 6-LIKE 2
    Primary source
    TAIR:AT4G33880
    Locus tag
    AT4G33880
    See related
    Araport:AT4G33880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17I5.70; F17I5_70; ROOT HAIR DEFECTIVE 6-LIKE 2
    Summary
    RSL2 was expressed concurrently with RSL4 and its expression was controlled by RHD6 and RSL1. Required for root-hair growth.
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    Genomic context

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    See RSL2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (16239363..16241169, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S14p/S29e family protein Neighboring gene Peroxidase superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Rymen B, et al. Plant Physiol, 2017 Mar. PMID 28167701, Free PMC Article
    2. A basic helix-loop-helix transcription factor controls cell growth and size in root hairs. Yi K, et al. Nat Genet, 2010 Mar. PMID 20139979
    3. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Heim MA, et al. Mol Biol Evol, 2003 May. PMID 12679534
    4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119546.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair initiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ROOT HAIR DEFECTIVE 6-LIKE 2
    NP_195114.2
    • ROOT HAIR DEFECTIVE 6-LIKE 2 (RSL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair initiation, response to auxin stimulus, cell growth, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G14760.1); Has 3067 Blast hits to 2987 proteins in 166 species: Archae - 0; Bacteria - 15; Metazoa - 165; Fungi - 32; Plants - 2687; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16239363..16241169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119546.3 → NP_195114.2  ROOT HAIR DEFECTIVE 6-LIKE 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195114.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81756, Q84WK0, Q8S3D3
      UniProtKB/TrEMBL
      A0A178V243, A0A5S9XYD8
      Conserved Domains (1) summary
      cd11454
      Location:273 → 335
      bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WK0.1

    Gene LinkOut

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