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    CRS1 / YhbY (CRM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829097, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CRS1 / YhbY (CRM) domain-containing protein
    Primary source
    TAIR:AT4G29750
    Locus tag
    AT4G29750
    See related
    Araport:AT4G29750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L4.260; T16L4_260
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (14569665..14573177)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene cytokinin oxidase 4 Neighboring gene ncRNA Neighboring gene target of trans acting-siR480/255 protein Neighboring gene target of trans acting-siR480/255 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341978.1
    NM_119121.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CRS1 / YhbY (CRM) domain-containing protein
    NP_194704.2
    • CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 408 Blast hits to 338 proteins in 45 species: Archae - 2; Bacteria - 2; Metazoa - 32; Fungi - 6; Plants - 353; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14569665..14573177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119121.3 → NP_194704.2  CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194704.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XX20, A0A654FU45, F4JNR2
      Conserved Domains (2) summary
      smart01103
      Location:647 → 734
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
      pfam01985
      Location:248 → 327
      CRS1_YhbY; CRS1 / YhbY (CRM) domain

    2. NM_001341978.1 → NP_001329382.1  CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXG0, A0A1P8B7L2
    Nucleotide Protein
    Heading Accession and Version

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