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    LOC8287634 splicing factor, suppressor of white-apricot homolog [ Ricinus communis (castor bean) ]

    Gene ID: 8287634, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8287634
    Gene description
    splicing factor, suppressor of white-apricot homolog
    Locus tag
    RCOM_0752240
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8287634 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 9 NC_063264.1 (7430718..7435938)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994640.1 (4876..9927, complement)

    Chromosome 9 - NC_063264.1Genomic Context describing neighboring genes Neighboring gene stigma-specific STIG1-like protein 1 Neighboring gene VPS35 endosomal protein-sorting factor-like Neighboring gene probable WRKY transcription factor 31 Neighboring gene aspartic proteinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor, suppressor of white-apricot homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063264.1 Reference ASM1957865v1

      Range
      7430718..7435938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002529398.4 → XP_002529444.1  splicing factor, suppressor of white-apricot homolog

      See identical proteins and their annotated locations for XP_002529444.1

      UniProtKB/TrEMBL
      B9STX5
      Conserved Domains (2) summary
      smart00648
      Location:152 → 202
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:3 → 114
      DRY_EERY; Alternative splicing regulator
    Nucleotide Protein
    Heading Accession and Version

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