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    RNA polymerase III RPC4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828621, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase III RPC4
    Primary source
    TAIR:AT4G25180
    Locus tag
    AT4G25180
    See related
    Araport:AT4G25180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24A6.20; F24A6_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (12911550..12914039, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene oleosin 1 Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene ncRNA Neighboring gene Uncharacterized conserved protein (UCP012943) Neighboring gene ncRNA Neighboring gene QWRF motif protein (DUF566) Neighboring gene mitochondrion-localized small heat shock protein 23.6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118650.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase III RPC4
    NP_194248.2
    • RNA polymerase III RPC4; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: RNA polymerase III RPC4 (TAIR:AT5G09380.1); Has 141 Blast hits to 141 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 19; Plants - 57; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12911550..12914039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118650.4 → NP_194248.2  RNA polymerase III RPC4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194248.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UX81, A0A5S9XVS1, Q6ICW8
      Conserved Domains (1) summary
      pfam05132
      Location:191 → 297
      RNA_pol_Rpc4; RNA polymerase III RPC4
    Nucleotide Protein
    Heading Accession and Version

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