U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    secE/sec61-gamma protein transport protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828594, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    secE/sec61-gamma protein transport protein
    Primary source
    TAIR:AT4G24920
    Locus tag
    AT4G24920
    See related
    Araport:AT4G24920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M23.60; F13M23_60
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (12819164..12820968, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene snurportin-1 protein Neighboring gene purple acid phosphatase 24 Neighboring gene coiled coil protein Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene thylakoid lumenal 17.9 kDa protein, chloroplast Neighboring gene SUMO-activating enzyme 1A

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001341719.1
    NM_118624.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in intracellular anatomical structure ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    secE/sec61-gamma protein transport protein
    NP_194222.1
    • secE/sec61-gamma protein transport protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein transport, protein targeting; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT5G50460.1); Has 578 Blast hits to 578 proteins in 210 species: Archae - 2; Bacteria - 0; Metazoa - 242; Fungi - 133; Plants - 109; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12819164..12820968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118624.4 → NP_194222.1  secE/sec61-gamma protein transport protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194222.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DI74, P0DI75, Q9SW34
      UniProtKB/TrEMBL
      A0A178UWJ6, A0A5S9XW96
      Conserved Domains (1) summary
      cl00481
      Location:7 → 68
      SecE; SecE/Sec61-gamma subunits of protein translocation complex

    2. NM_001341719.1 → NP_001329073.1  secE/sec61-gamma protein transport protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6L2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DI74.1
    P0DI75.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials