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    LOC8285456 oxysterol-binding protein-related protein 1D [ Ricinus communis (castor bean) ]

    Gene ID: 8285456, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC8285456
    Gene description
    oxysterol-binding protein-related protein 1D
    Locus tag
    RCOM_1083170
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8285456 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 7 NC_063262.1 (27671563..27678051, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994293.1 (1606535..1613101)

    Chromosome 7 - NC_063262.1Genomic Context describing neighboring genes Neighboring gene D-cysteine desulfhydrase 2, mitochondrial Neighboring gene protein SDA1 homolog Neighboring gene actin-related protein 3 Neighboring gene heterogeneous nuclear ribonucleoproteins A1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxysterol-binding protein-related protein 1D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063262.1 Reference ASM1957865v1

      Range
      27671563..27678051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002514996.4 → XP_002515042.1  oxysterol-binding protein-related protein 1D

      See identical proteins and their annotated locations for XP_002515042.1

      UniProtKB/TrEMBL
      B9RMS3
      Conserved Domains (3) summary
      cd13294
      Location:107 → 243
      PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
      pfam00169
      Location:109 → 237
      PH; PH domain
      pfam01237
      Location:449 → 793
      Oxysterol_BP; Oxysterol-binding protein
    Nucleotide Protein
    Heading Accession and Version

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