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    LOC8283944 probable 2-oxoglutarate-dependent dioxygenase SLC1 [ Ricinus communis (castor bean) ]

    Gene ID: 8283944, updated on 25-May-2022

    Summary

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    Gene symbol
    LOC8283944
    Gene description
    probable 2-oxoglutarate-dependent dioxygenase SLC1
    Locus tag
    RCOM_1352440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8283944 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 10 NC_063265.1 (15302673..15305105)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994341.1 (105065..107520, complement)

    Chromosome 10 - NC_063265.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL7 Neighboring gene purine-uracil permease NCS1 Neighboring gene carotene epsilon-monooxygenase, chloroplastic Neighboring gene nicotinate N-methyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable 2-oxoglutarate-dependent dioxygenase SLC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063265.1 Reference ASM1957865v1

      Range
      15302673..15305105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002519382.4 → XP_002519428.1  probable 2-oxoglutarate-dependent dioxygenase SLC1

      See identical proteins and their annotated locations for XP_002519428.1

      UniProtKB/TrEMBL
      B9S0A9
      Conserved Domains (3) summary
      PLN02947
      Location:1 → 374
      PLN02947; oxidoreductase
      pfam03171
      Location:223 → 320
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:63 → 171
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
    Nucleotide Protein
    Heading Accession and Version

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