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    LOC8280125 rop guanine nucleotide exchange factor 14 [ Ricinus communis (castor bean) ]

    Gene ID: 8280125, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8280125
    Gene description
    rop guanine nucleotide exchange factor 14
    Locus tag
    RCOM_0867270
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8280125 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (27935415..27941602)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994348.1 (610232..616477, complement)

    Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8280127 Neighboring gene uncharacterized LOC8280126 Neighboring gene alkylated DNA repair protein ALKBH8 homolog Neighboring gene ubiquitin-fold modifier 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rop guanine nucleotide exchange factor 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063260.1 Reference ASM1957865v1

      Range
      27935415..27941602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015719632.2 → XP_015575118.1  rop guanine nucleotide exchange factor 14 isoform X1

      Conserved Domains (1) summary
      pfam03759
      Location:119 → 478
      PRONE; PRONE (Plant-specific Rop nucleotide exchanger)

    2. XM_002519876.4 → XP_002519922.1  rop guanine nucleotide exchange factor 14 isoform X2

      See identical proteins and their annotated locations for XP_002519922.1

      UniProtKB/TrEMBL
      B9S1Q7
      Conserved Domains (1) summary
      pfam03759
      Location:91 → 450
      PRONE; PRONE (Plant-specific Rop nucleotide exchanger)
    Nucleotide Protein
    Heading Accession and Version

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