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    FBD, F-box/LRR protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827169, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box/LRR protein
    Primary source
    TAIR:AT4G15060
    Locus tag
    AT4G15060
    See related
    Araport:AT4G15060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3575W; FCAALL.180
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (8599035..8601761)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene FBD-like domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box/LRR protein
    NP_193242.3
    • CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8599035..8601761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117593.3 → NP_193242.3  FBD, F-box/LRR protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193242.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FPH4
      Conserved Domains (4) summary
      sd00032
      Location:304 → 325
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:172 → 217
      F-box; F-box domain
      pfam07723
      Location:325 → 350
      LRR_2; Leucine Rich Repeat
      pfam08387
      Location:102 → 147
      FBD; FBD

    2. NM_001340990.1 → NP_001328179.1  FBD, F-box/LRR protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JJC9, O23360
      UniProtKB/TrEMBL
      A0A178V150
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23360.2

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