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    mediator of RNA polymerase II transcription subunit, putative (DUF3511) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826579, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of RNA polymerase II transcription subunit, putative (DUF3511)
    Primary source
    TAIR:AT4G09890
    Locus tag
    AT4G09890
    See related
    Araport:AT4G09890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5L19.20; T5L19_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (6218319..6218989)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene methyl esterase 12 Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_117057.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit, putative (DUF3511)
    NP_192727.1
    • Protein of unknown function (DUF3511); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT5G11970.1); Has 187 Blast hits to 187 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6218319..6218989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117057.4 → NP_192727.1  mediator of RNA polymerase II transcription subunit, putative (DUF3511) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192727.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4C7, Q9T0E8
      Conserved Domains (1) summary
      pfam12023
      Location:39 → 77
      DUF3511; Domain of unknown function (DUF3511)
    Nucleotide Protein
    Heading Accession and Version

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