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    LisH and RanBPM domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826513, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LisH and RanBPM domains containing protein
    Primary source
    TAIR:AT4G09300
    Locus tag
    AT4G09300
    See related
    Araport:AT4G09300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30A10.60; T30A10_60
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (5898761..5901022)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene SPla/RYanodine receptor (SPRY) domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340615.1
    NM_001340616.1
    NM_001340617.1
    NM_001340618.1
    NM_116998.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LisH and RanBPM domains containing protein
    NP_192668.2
    • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 506 Blast hits to 506 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 197; Fungi - 89; Plants - 154; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      5898761..5901022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116998.4 → NP_192668.2  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192668.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F179, Q8GYP0, Q9SMS4
      Conserved Domains (2) summary
      pfam08513
      Location:26 → 50
      LisH
      pfam10607
      Location:61 → 201
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    2. NM_001340615.1 → NP_001328626.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F179, Q8GYP0, Q9SMS4
      Conserved Domains (2) summary
      pfam08513
      Location:26 → 50
      LisH
      pfam10607
      Location:61 → 201
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    3. NM_001340616.1 → NP_001328623.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B572, A0A7G2F287, Q9SMS4
      Conserved Domains (2) summary
      pfam08513
      Location:26 → 50
      LisH
      pfam10607
      Location:60 → 200
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    4. NM_001340617.1 → NP_001328625.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5A1, Q9SMS4

    5. NM_001340618.1 → NP_001328624.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B574
    Nucleotide Protein
    Heading Accession and Version

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