U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    hypothetical protein (DUF1644) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826405, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    hypothetical protein (DUF1644)
    Primary source
    TAIR:AT4G08460
    Locus tag
    AT4G08460
    See related
    Araport:AT4G08460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15F16.1; T15F16_1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (5377064..5380882, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BTB/POZ domain-containing protein Neighboring gene MAPK/ERK kinase kinase 3 Neighboring gene ncRNA Neighboring gene mitogen-activated protein kinase kinase kinase 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001203762.1
    NM_001340587.1
    NM_116915.6
    NM_202792.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    hypothetical protein (DUF1644)
    NP_001319884.1
    • FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G77770.1).
    NP_192586.1
    • FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G77770.1); Has 271 Blast hits to 248 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974521.1
    • FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G77770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      5377064..5380882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340587.1 → NP_001319884.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V260, A0A384KHN3, A0A5S9XQG2, Q9M0T4
      Conserved Domains (1) summary
      pfam07800
      Location:47 → 186
      DUF1644; Protein of unknown function (DUF1644)

    2. NM_001203762.1 → NP_001190691.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190691.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V260, A0A384KHN3, A0A5S9XQG2, Q9M0T4
      Conserved Domains (1) summary
      pfam07800
      Location:47 → 186
      DUF1644; Protein of unknown function (DUF1644)

    3. NM_116915.6 → NP_192586.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192586.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V260, A0A384KHN3, A0A5S9XQG2, Q9M0T4
      Conserved Domains (1) summary
      pfam07800
      Location:47 → 186
      DUF1644; Protein of unknown function (DUF1644)

    4. NM_202792.1 → NP_974521.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974521.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V260, A0A384KHN3, A0A5S9XQG2, Q9M0T4
      Conserved Domains (1) summary
      pfam07800
      Location:47 → 186
      DUF1644; Protein of unknown function (DUF1644)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools