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    LOC8262712 calcium-dependent protein kinase 11 [ Ricinus communis (castor bean) ]

    Gene ID: 8262712, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC8262712
    Gene description
    calcium-dependent protein kinase 11
    Locus tag
    RCOM_0685930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8262712 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 2 NC_063257.1 (9901405..9910636, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994521.1 (122906..132114)

    Chromosome 2 - NC_063257.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L21, chloroplastic Neighboring gene uncharacterized membrane protein At4g09580 Neighboring gene uncharacterized LOC8262710 Neighboring gene ABC transporter G family member 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium/calmodulin-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein autophosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-dependent protein kinase 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063257.1 Reference ASM1957865v1

      Range
      9901405..9910636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015723943.3 → XP_015579429.1  calcium-dependent protein kinase 11 isoform X2

      Conserved Domains (4) summary
      PTZ00184
      Location:335 → 477
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:419 → 478
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd05117
      Location:40 → 298
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
      pfam00069
      Location:41 → 299
      Pkinase; Protein kinase domain

    2. XM_002526769.4 → XP_002526815.1  calcium-dependent protein kinase 11 isoform X1

      See identical proteins and their annotated locations for XP_002526815.1

      UniProtKB/TrEMBL
      B9SLE6
      Conserved Domains (4) summary
      PTZ00184
      Location:324 → 466
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:408 → 467
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd05117
      Location:29 → 287
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
      pfam00069
      Location:30 → 288
      Pkinase; Protein kinase domain
    Nucleotide Protein
    Heading Accession and Version

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