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    SKIP4 SKP1 interacting partner 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825307, updated on 18-Sep-2024

    Summary

    Official Symbol
    SKIP4
    Official Full Name
    SKP1 interacting partner 4
    Primary source
    TAIR:AT3G61350
    Locus tag
    AT3G61350
    See related
    Araport:AT3G61350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SKP1 interacting partner 4
    Summary
    Encodes an SKP1 interacting partner (SKIP4).
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    Genomic context

    See SKIP4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (22702632..22704481)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene pre-mRNA-splicing factor CWC22-like protein (DUF3245) Neighboring gene ncRNA

    Interactions

    General gene information

    NM_001340087.1
    NM_115999.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    SKP1 interacting partner 4
    NP_567112.1
    • SKP1 interacting partner 4 (SKIP4); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 3566 Blast hits to 2975 proteins in 175 species: Archae - 6; Bacteria - 195; Metazoa - 2199; Fungi - 2; Plants - 1060; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22702632..22704481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115999.5 → NP_567112.1  SKP1 interacting partner 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567112.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GW14, Q9FV01, Q9M2C9
      UniProtKB/TrEMBL
      A0A5S9XPH5, A0A7G2EZK0
      Conserved Domains (4) summary
      PHA03098
      Location:100 → 322
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:83 → 150
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:112 → 157
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:22 → 60
      F-box; F-box domain
    2. NM_001340087.1 → NP_001327045.1  SKP1 interacting partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GW14, Q9FV01, Q9M2C9
      UniProtKB/TrEMBL
      A0A5S9XPH5, A0A7G2EZK0
      Conserved Domains (4) summary
      PHA03098
      Location:100 → 322
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:83 → 150
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:112 → 157
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:22 → 60
      F-box; F-box domain
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