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    SRS6 SHI-related sequence 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824609, updated on 18-Sep-2024

    Summary

    Official Symbol
    SRS6
    Official Full Name
    SHI-related sequence 6
    Primary source
    TAIR:AT3G54430
    Locus tag
    AT3G54430
    See related
    Araport:AT3G54430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SHI-related sequence 6; T14E10.2
    Summary
    A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
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    Genomic context

    See SRS6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (20146626..20148221, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene hypothetical protein (DUF1163) Neighboring gene homolog of carrot EP3-3 chitinase Neighboring gene glycoside hydrolase family 2 protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

    Interactions

    General gene information

    NM_115303.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus  

    General protein information

    Preferred Names
    SHI-related sequence 6
    NP_191011.1
    • SHI-related sequence 6 (SRS6); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G12330.4); Has 173 Blast hits to 173 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20146626..20148221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115303.2 → NP_191011.1  SHI-related sequence 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191011.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M2U4
      UniProtKB/TrEMBL
      A0A178VCM3, A0A5S9XKR3, A0A654FGT0
      Conserved Domains (1) summary
      pfam05142
      Location:37 → 173
      DUF702; Domain of unknown function (DUF702)
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