U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Phum_PHUM257260 serine palmitoyltransferase, putative [ Pediculus humanus corporis (human body louse) ]

    Gene ID: 8235239, updated on 6-Jan-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Phum_PHUM257260
    Gene description
    serine palmitoyltransferase, putative
    Locus tag
    Phum_PHUM257260
    See related
    VectorBase:PHUM257260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pediculus humanus corporis (strain: USDA, sub-species: corporis)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Psocodea; Phthiraptera; Anoplura; Pediculidae; Pediculus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Phum_PHUM257260 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_002987244.1Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic murine leukemia virus receptor xpr1, putative Neighboring gene Cystathionine gamma-lyase, putative Neighboring gene uncharacterized protein Neighboring gene serine/threonine-protein kinase PITSLRE, putative

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_002987244.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine C-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    serine palmitoyltransferase, putative
    XP_002426506.1
    • encoded by transcript Phum_PHUM257260-RA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002987244.1 Reference assembly

      Range
      123429..124841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002426461.1 → XP_002426506.1  serine palmitoyltransferase, putative [Pediculus humanus corporis]

      See identical proteins and their annotated locations for XP_002426506.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E0VK62
      Conserved Domains (2) summary
      COG0156
      Location:78 → 463
      BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
      cl18945
      Location:25 → 463
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials