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    PIF / Ping-Pong family of plant transposase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821446, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PIF / Ping-Pong family of plant transposase
    Primary source
    TAIR:AT3G19120
    Locus tag
    AT3G19120
    See related
    Araport:AT3G19120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (6609350..6611138, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding protein Neighboring gene Protein kinase superfamily protein Neighboring gene RNA-binding protein 47B Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112799.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    PIF / Ping-Pong family of plant transposase
    NP_566626.1
    • PIF / Ping-Pong family of plant transposases; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 644 Blast hits to 642 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 49; Plants - 189; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6609350..6611138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112799.4 → NP_566626.1  PIF / Ping-Pong family of plant transposase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566626.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAQ1, A0A5S9XDS6, Q9LJL8
      Conserved Domains (1) summary
      cl21562
      Location:228 → 392
      DDE_Tnp_4; DDE superfamily endonuclease
    Nucleotide Protein
    Heading Accession and Version

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