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    EF hand calcium-binding protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821262, updated on 18-Sep-2024

    Summary

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    Official Full Name
    EF hand calcium-binding protein family
    Primary source
    TAIR:AT3G03410
    Locus tag
    AT3G03410
    See related
    Araport:AT3G03410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21P5.17; T21P5_17
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (811324..811719, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene EF hand calcium-binding protein family Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene Ku70-binding family protein Neighboring gene Calcium-binding EF-hand family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana. Song J, et al. J Biomol NMR, 2004 Dec. PMID 15630565
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NMR structure of calcium binding domain
      Title: Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_111212.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    EF hand calcium-binding protein family
    NP_186991.1
    • EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 14553 Blast hits to 10409 proteins in 1208 species: Archae - 0; Bacteria - 112; Metazoa - 5551; Fungi - 2786; Plants - 4039; Viruses - 0; Other Eukaryotes - 2065 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      811324..811719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111212.1 → NP_186991.1  EF hand calcium-binding protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186991.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0JPZ0, Q9SRP5
      UniProtKB/TrEMBL
      A0A178VEG7, A0A5S9X8Q7
      Conserved Domains (1) summary
      PTZ00184
      Location:4 → 128
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRP5.1

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