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    HS1 heat stable protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820980, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HS1
    Official Full Name
    heat stable protein 1
    Primary source
    TAIR:AT3G17210
    Locus tag
    AT3G17210
    See related
    Araport:AT3G17210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA HEAT STABLE PROTEIN 1; ATHS1; heat stable protein 1
    Summary
    Encodes a heat stable protein with antimicrobial and antifungal activity.
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    Genomic context

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    See HS1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (5881919..5883200)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ubiquitin protein ligase 6 Neighboring gene pectin methylesterase inhibitor 2 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a heat-stable protein with antimicrobial activity from Arabidopsis thaliana. Park SC, et al. Biochem Biophys Res Commun, 2007 Oct 26. PMID 17720140
    2. Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana. Bingman CA, et al. Proteins, 2004 Oct 1. PMID 15326607
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The crystal structure of At3g17210 protein is best described as a dimer on a two-fold crystallographic axis.
      Title: Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338278.1
    NM_112598.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    heat stable protein 1
    NP_001319574.1
    • heat stable protein 1 (HS1); INVOLVED IN: defense response to fungus, defense response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: Stress responsive A/B Barrel Domain (TAIR:AT5G22580.1); Has 431 Blast hits to 430 proteins in 120 species: Archae - 0; Bacteria - 167; Metazoa - 0; Fungi - 40; Plants - 173; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5881919..5883200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338278.1 → NP_001319574.1  heat stable protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WKU8, Q8LCB1, Q9LUV2
      UniProtKB/TrEMBL
      A0A178VKB6, A0A5S9XD49
      Conserved Domains (1) summary
      pfam07876
      Location:8 → 104
      Dabb; Stress responsive A/B Barrel Domain

    2. NM_112598.4 → NP_566569.1  heat stable protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566569.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WKU8, Q8LCB1, Q9LUV2
      UniProtKB/TrEMBL
      A0A178VKB6, A0A5S9XD49
      Conserved Domains (1) summary
      pfam07876
      Location:8 → 104
      Dabb; Stress responsive A/B Barrel Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUV2.1

    Gene LinkOut

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