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    MYB1 myb domain protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820079, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB1
    Official Full Name
    myb domain protein 1
    Primary source
    TAIR:AT3G09230
    Locus tag
    AT3G09230
    See related
    Araport:AT3G09230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB1; myb domain protein 1
    Summary
    member of MYB3R- and R2R3- type MYB- encoding genes
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    Genomic context

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    See MYB1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2833346..2835390)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L10 family protein Neighboring gene plastid transcriptionally active 13 Neighboring gene laccase 7 Neighboring gene kinase with tetratricopeptide repeat domain-containing protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein Neighboring gene ncRNA Neighboring gene Glycosyl hydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a gene from Arabidopsis thaliana encoding a myb homologue. Shinozaki K, et al. Plant Mol Biol, 1992 Jun. PMID 1623193
    2. Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Verma N, et al. Plant J, 2017 Nov. PMID 28849604
    3. Characterization of Arabidopsis thaliana R2R3 S23 MYB Transcription Factors as Novel Targets of the Ubiquitin Proteasome-Pathway and Regulators of Salt Stress and Abscisic Acid Response. Beathard C, et al. Front Plant Sci, 2021. PMID 34489986, Free PMC Article
    4. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111757.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 1
    NP_187534.1
    • myb domain protein 1 (MYB1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 109 (TAIR:AT3G55730.1); Has 8868 Blast hits to 7976 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 777; Fungi - 540; Plants - 5565; Viruses - 3; Other Eukaryotes - 1983 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2833346..2835390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111757.4 → NP_187534.1  myb domain protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187534.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42575
      UniProtKB/TrEMBL
      A0A178VBI5, A0A5S9XAI7, A0A654F6K2
      Conserved Domains (1) summary
      PLN03091
      Location:55 → 158
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42575.1

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