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    Nuclear pore localization protein NPL4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819409, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nuclear pore localization protein NPL4
    Primary source
    TAIR:AT2G47970
    Locus tag
    AT2G47970
    See related
    Araport:AT2G47970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J23.1
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19629217..19631188)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene myelin transcription factor-like protein Neighboring gene trafficking protein particle complex subunit-like protein Neighboring gene sister-chromatid cohesion protein 3 Neighboring gene ncRNA Neighboring gene transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130364.4
    NM_201985.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Nuclear pore localization protein NPL4
    NP_566118.1
    • Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    NP_973714.1
    • Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19629217..19631188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130364.4 → NP_566118.1  Nuclear pore localization protein NPL4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566118.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82264, Q3E6N3
      UniProtKB/TrEMBL
      A0A178VXH4, A0A5S9X7X9, A0A654F4F3
      Conserved Domains (2) summary
      cd08061
      Location:120 → 375
      MPN_NPL4; Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain
      cd17055
      Location:2 → 85
      Ubl_AtNPL4_like; ubiquitin-like (Ubl) domain found in Arabidopsis thaliana NPL4-like proteins NPL4-1, NPL4-2, and similar proteins

    2. NM_201985.1 → NP_973714.1  Nuclear pore localization protein NPL4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973714.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F4F3
      Conserved Domains (2) summary
      cd08061
      Location:120 → 325
      MPN_NPL4; Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain
      cl00155
      Location:2 → 85
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82264.1

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