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    SEC61 BETA Preprotein translocase Sec, Sec61-beta subunit protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819114, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SEC61 BETA
    Official Full Name
    Preprotein translocase Sec, Sec61-beta subunit protein
    Primary source
    TAIR:AT2G45070
    Locus tag
    AT2G45070
    See related
    Araport:AT2G45070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SEC 61 BETA SUBUNIT; SUPPRESSORS OF SECRETION-DEFECTIVE 61 BETA; T14P1.12
    Summary
    Sec61 Beta Subunit
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    Genomic context

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    See SEC61 BETA in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18586974..18588452, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 2 Neighboring gene alanine-tRNA ligase Neighboring gene cyclin p3;1 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 2in1 Vectors Improve In Planta BiFC and FRET Analyses. Mehlhorn DG, et al. Methods Mol Biol, 2018. PMID 29043675
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036462.1
    NM_001036463.2
    NM_001084592.2
    NM_130071.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Sec61 translocon complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Preprotein translocase Sec, Sec61-beta subunit protein
    NP_001031539.1
    • SUPPRESSORS OF SECRETION-DEFECTIVE 61 BETA (SEC61 BETA); CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT3G60540.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001031540.1
    • SUPPRESSORS OF SECRETION-DEFECTIVE 61 BETA (SEC61 BETA); CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT3G60540.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078061.1
    • SUPPRESSORS OF SECRETION-DEFECTIVE 61 BETA (SEC61 BETA); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT3G60540.2); Has 394 Blast hits to 394 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 114; Plants - 109; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
    NP_182033.1
    • SUPPRESSORS OF SECRETION-DEFECTIVE 61 BETA (SEC61 BETA); CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT3G60540.2); Has 394 Blast hits to 394 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 114; Plants - 109; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18586974..18588452 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084592.2 → NP_001078061.1  Preprotein translocase Sec, Sec61-beta subunit protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078061.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P38389
      UniProtKB/TrEMBL
      A0A178VIX0, A0A178VTT1, A0A384KFJ4, A0A5S9XMI6, B9DGF7
      Conserved Domains (1) summary
      pfam03911
      Location:40 → 76
      Sec61_beta; Sec61beta family

    2. NM_001036463.2 → NP_001031540.1  Preprotein translocase Sec, Sec61-beta subunit protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031540.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P38389
      UniProtKB/TrEMBL
      A0A178VIX0, A0A178VTT1, A0A384KFJ4, A0A5S9XMI6, B9DGF7
      Conserved Domains (1) summary
      pfam03911
      Location:40 → 76
      Sec61_beta; Sec61beta family

    3. NM_001036462.1 → NP_001031539.1  Preprotein translocase Sec, Sec61-beta subunit protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031539.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P38389
      UniProtKB/TrEMBL
      A0A178VIX0, A0A178VTT1, A0A384KFJ4, A0A5S9XMI6, B9DGF7
      Conserved Domains (1) summary
      pfam03911
      Location:40 → 76
      Sec61_beta; Sec61beta family

    4. NM_130071.4 → NP_182033.1  Preprotein translocase Sec, Sec61-beta subunit protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182033.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P38389
      UniProtKB/TrEMBL
      A0A178VIX0, A0A178VTT1, A0A384KFJ4, A0A5S9XMI6, B9DGF7
      Conserved Domains (1) summary
      pfam03911
      Location:40 → 76
      Sec61_beta; Sec61beta family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38389.1

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