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    Peptidase family C54 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819020, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidase family C54 protein
    Primary source
    TAIR:AT2G44140
    Locus tag
    AT2G44140
    See related
    Araport:AT2G44140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6E13.27
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (18253497..18258293, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Seven transmembrane MLO family protein Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene histone-lysine N-methyltransferase ASHH3 Neighboring gene methylenetetrahydrofolate reductase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ATG4 cysteine proteases specificity toward ATG8 substrates. Park E, et al. Autophagy, 2014 May. PMID 24658121, Free PMC Article
    2. Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Yoshimoto K, et al. Plant Cell, 2004 Nov. PMID 15494556, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337075.1
    NM_001337076.1
    NM_001337077.1
    NM_001337078.1
    NM_180081.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables endopeptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein-phosphatidylethanolamide deconjugating activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within autophagy IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Peptidase family C54 protein
    NP_001318423.1
    • Peptidase family C54 protein; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: Peptidase family C54 protein (TAIR:AT3G59950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850412.1
    • Peptidase family C54 protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: Peptidase family C54 protein (TAIR:AT3G59950.1); Has 835 Blast hits to 797 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 180; Plants - 81; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18253497..18258293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180081.4 → NP_850412.1  Peptidase family C54 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850412.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80583, Q3EBG5, Q8S929
      UniProtKB/TrEMBL
      A0A178VZV2, A0A5S9X6V6
      Conserved Domains (1) summary
      pfam03416
      Location:137 → 421
      Peptidase_C54; Peptidase family C54

    2. NM_001337075.1 → NP_001318423.1  Peptidase family C54 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X6V6

    3. NM_001337076.1 → NP_001324765.1  Peptidase family C54 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80583, Q3EBG5, Q8S929
      UniProtKB/TrEMBL
      A0A178VZV2, A0A5S9X6V6
      Conserved Domains (1) summary
      pfam03416
      Location:137 → 421
      Peptidase_C54; Peptidase family C54

    4. NM_001337077.1 → NP_001324764.1  Peptidase family C54 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZ47, A0A1P8B152, A0A384L0G3, A0A5S9X6V6
      Conserved Domains (1) summary
      pfam03416
      Location:54 → 338
      Peptidase_C54; Peptidase family C54

    5. NM_001337078.1 → NP_001324763.1  Peptidase family C54 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B129, A0A5S9X6V6
      Conserved Domains (1) summary
      pfam03416
      Location:137 → 389
      Peptidase_C54; Peptidase family C54
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S929.1

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