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    flocculation FLO11-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818595, updated on 18-Sep-2024

    Summary

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    Official Full Name
    flocculation FLO11-like protein
    Primary source
    TAIR:AT2G40070
    Locus tag
    AT2G40070
    See related
    Araport:AT2G40070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Basic Proline-rich Protein 1; BPP1; T28M21.23; T28M21_23
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16728193..16731736, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase D1B Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Clathrin light chain protein Neighboring gene ncRNA Neighboring gene EARLY FLOWERING-like protein (DUF1313)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Basic Proline-Rich Protein-Mediated Microtubules Are Essential for Lobe Growth and Flattened Cell Geometry. Wong JH, et al. Plant Physiol, 2019 Dec. PMID 31601644, Free PMC Article
    2. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084559.1
    NM_001336819.1
    NM_129565.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within anisotropic cell growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within cortical microtubule organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    flocculation FLO11-like protein
    NP_001078028.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 108635 Blast hits to 60786 proteins in 2176 species: Archae - 287; Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants - 4416; Viruses - 2864; Other Eukaryotes - 19662 (source: NCBI BLink).
    NP_181536.3
    • BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16728193..16731736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129565.5 → NP_181536.3  flocculation FLO11-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181536.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZ51, C0Z3I5, Q494P4
      Conserved Domains (2) summary
      PHA03247
      Location:179 → 436
      PHA03247; large tegument protein UL36; Provisional
      cl01482
      Location:13 → 59
      CpxP_like; CpxP component of the bacterial Cpx-two-component system and related proteins

    2. NM_001336819.1 → NP_001323814.1  flocculation FLO11-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY74, C0Z3I5

    3. NM_001084559.1 → NP_001078028.1  flocculation FLO11-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078028.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRI7, C0Z3I5
      Conserved Domains (1) summary
      PHA03247
      Location:139 → 396
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein
    Heading Accession and Version

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