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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818067, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G35030
    Locus tag
    AT2G35030
    See related
    Araport:AT2G35030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COD1; CYTOCHROME C OXIDASE DEFICIENT 1; F19I3.26; F19I3_26
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (14760728..14763134, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene thioredoxin O1 Neighboring gene N-acetylglucosamine-1-phosphate uridylyltransferase 2 Neighboring gene urease accessory protein D Neighboring gene AICARFT/IMPCHase bienzyme family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129055.4

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_181048.1
    • Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 50772 Blast hits to 15060 proteins in 312 species: Archae - 12; Bacteria - 55; Metazoa - 198; Fungi - 231; Plants - 49530; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14760728..14763134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129055.4 → NP_181048.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181048.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64766
      UniProtKB/TrEMBL
      A0A178VUD6, A0A5S9X415, A0A654F0D4
      Conserved Domains (6) summary
      TIGR00756
      Location:400 → 434
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:142 → 169
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:172 → 202
      PPR; PPR repeat
      pfam12854
      Location:134 → 167
      PPR_1; PPR repeat
      pfam13041
      Location:139 → 181
      PPR_2; PPR repeat family
      pfam14432
      Location:571 → 625
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64766.1

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