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    NF-YA4 nuclear factor Y, subunit A4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818037, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NF-YA4
    Official Full Name
    nuclear factor Y, subunit A4
    Primary source
    TAIR:AT2G34720
    Locus tag
    AT2G34720
    See related
    Araport:AT2G34720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; nuclear factor Y; subunit A4; subunit A4''; T29F13.7; T29F13_7
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    Genomic context

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    See NF-YA4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (14649706..14651709, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Neighboring gene ncRNA Neighboring gene myosin heavy chain-like protein Neighboring gene protein phosphatase 2C family protein Neighboring gene RNA polymerase I specific transcription initiation factor RRN3 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. Liu JX, et al. Plant Cell, 2010 Mar. PMID 20207753, Free PMC Article
    2. Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Yamamoto A, et al. Plant J, 2009 Jun. PMID 19207209
    3. CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. Wenkel S, et al. Plant Cell, 2006 Nov. PMID 17138697, Free PMC Article
    4. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235
    5. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001336524.1
    NM_001336525.1
    NM_179904.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit A4
    NP_850235.1
    • ''nuclear factor Y, subunit A4'' (NF-YA4); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A7 (TAIR:AT1G30500.2); Has 682 Blast hits to 682 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 131; Plants - 381; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14649706..14651709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179904.5 → NP_850235.1  nuclear factor Y, subunit A4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850235.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64585, Q8VY64
      UniProtKB/TrEMBL
      A0A178VVC3, A0A178VWS5, A0A5S9X3Y5
      Conserved Domains (1) summary
      cl02165
      Location:95 → 156
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    2. NM_001336524.1 → NP_001323828.1  nuclear factor Y, subunit A4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYC2
      Conserved Domains (1) summary
      cl02165
      Location:60 → 121
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    3. NM_001336525.1 → NP_001323827.1  nuclear factor Y, subunit A4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYC2
      Conserved Domains (1) summary
      cl02165
      Location:60 → 121
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY64.1

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