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    UBP1 ubiquitin-specific protease 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817839, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP1
    Official Full Name
    ubiquitin-specific protease 1
    Primary source
    TAIR:AT2G32780
    Locus tag
    AT2G32780
    See related
    Araport:AT2G32780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATUBP1; F24L7.8; F24L7_8; ubiquitin-specific protease 1
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    Genomic context

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    See UBP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (13898410..13901870, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene small ubiquitinrelated modifier 5 Neighboring gene purple acid phosphatase 13 Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Lambermon MH, et al. Mol Cell Biol, 2002 Jun. PMID 12024044, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128838.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-specific protease 1
    NP_565753.1
    • ubiquitin-specific protease 1 (UBP1); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 2 (TAIR:AT1G04860.1); Has 10180 Blast hits to 6642 proteins in 266 species: Archae - 0; Bacteria - 16; Metazoa - 5268; Fungi - 1912; Plants - 1372; Viruses - 7; Other Eukaryotes - 1605 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13898410..13901870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128838.2 → NP_565753.1  ubiquitin-specific protease 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565753.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48839, Q9FPT5
      UniProtKB/TrEMBL
      A0A5S9X3L1
      Conserved Domains (4) summary
      smart00290
      Location:83 → 136
      ZnF_UBP; Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger
      cd02667
      Location:791 → 1081
      Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:203 → 362
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:201 → 366
      UCH; Ubiquitin carboxyl-terminal hydrolase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FPT5.2

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