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    Cell differentiation, Rcd1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817816, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cell differentiation, Rcd1-like protein
    Primary source
    TAIR:AT2G32550
    Locus tag
    AT2G32550
    See related
    Araport:AT2G32550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26B15.11; T26B15_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (13819352..13822861)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like B3 Neighboring gene cellulose synthase-like B4 Neighboring gene miscRNA Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336403.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cell differentiation, Rcd1-like protein
    NP_001318338.1
    • Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT5G12980.1); Has 472 Blast hits to 471 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 133; Plants - 100; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13819352..13822861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128814.3 → NP_180814.2  Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180814.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS89, A0A5S9X3U0, Q58FZ9
      Conserved Domains (1) summary
      pfam04078
      Location:65 → 320
      Rcd1; Cell differentiation family, Rcd1-like

    2. NM_001336404.1 → NP_001325240.1  Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2J7

    3. NM_001336403.1 → NP_001318338.1  Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ITS3
    Nucleotide Protein
    Heading Accession and Version

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