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    EMB3147 EMBRYO DEFECTIVE 3147 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817570, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB3147
    Official Full Name
    EMBRYO DEFECTIVE 3147
    Primary source
    TAIR:AT2G30200
    Locus tag
    AT2G30200
    See related
    Araport:AT2G30200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3147; T27E13.6; T27E13_6
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    Genomic context

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    See EMB3147 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (12882948..12885776, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene ncRNA Neighboring gene laccase 3 Neighboring gene GDSL-like Lipase/Acylhydrolase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plastidial and Mitochondrial Malonyl CoA-ACP Malonyltransferase is Essential for Cell Division and Its Overexpression Increases Storage Oil Content. Jung SH, et al. Plant Cell Physiol, 2019 Jun 1. PMID 30796840
    2. Dual-Localized Enzymatic Components Constitute the Fatty Acid Synthase Systems in Mitochondria and Plastids. Guan X, et al. Plant Physiol, 2020 Jun. PMID 32245791, Free PMC Article
    3. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The plastidial and mitochondrial MCAMT is essential for Arabidopsis cell division and is a novel genetic resource useful for enhancing storage oil content in oilseed crops. [MCAMT]
      Title: Plastidial and Mitochondrial Malonyl CoA-ACP Malonyltransferase is Essential for Cell Division and Its Overexpression Increases Storage Oil Content.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128573.4
    NM_201835.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables [acyl-carrier-protein] S-malonyltransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    EMBRYO DEFECTIVE 3147
    NP_565697.1
    • catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding; FUNCTIONS IN: binding, transferase activity, [acyl-carrier-protein] S-malonyltransferase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Malonyl CoA-acyl carrier protein transacylase (InterPro:IPR004410), Acyl transferase domain (InterPro:IPR001227), Acyl transferase (InterPro:IPR014043), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 16466 Blast hits to 15045 proteins in 2783 species: Archae - 4; Bacteria - 12057; Metazoa - 203; Fungi - 1221; Plants - 66; Viruses - 0; Other Eukaryotes - 2915 (source: NCBI BLink).
    NP_973564.2
    • catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding; FUNCTIONS IN: binding, transferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Acyl transferase domain (InterPro:IPR001227), Acyl transferase (InterPro:IPR014043), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 15695 Blast hits to 14359 proteins in 2779 species: Archae - 4; Bacteria - 11793; Metazoa - 195; Fungi - 1104; Plants - 63; Viruses - 0; Other Eukaryotes - 2536 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12882948..12885776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128573.4 → NP_565697.1  EMBRYO DEFECTIVE 3147 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565697.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X2M9, A0A654EYK5, Q8RU07
      Conserved Domains (1) summary
      PLN02752
      Location:50 → 393
      PLN02752; [acyl-carrier protein] S-malonyltransferase

    2. NM_201835.2 → NP_973564.2  EMBRYO DEFECTIVE 3147 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973564.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X2M9, A0A654EYK5, F4IMR0
      Conserved Domains (1) summary
      PLN02752
      Location:50 → 368
      PLN02752; [acyl-carrier protein] S-malonyltransferase
    Nucleotide Protein
    Heading Accession and Version

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