U.S. flag

An official website of the United States government

    • Showing Current items.

    OTLD1 OTU-like cysteine protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817278, updated on 18-Sep-2024

    Summary

    Official Symbol
    OTLD1
    Official Full Name
    OTU-like cysteine protease family protein
    Primary source
    TAIR:AT2G27350
    Locus tag
    AT2G27350
    See related
    Araport:AT2G27350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K2.7; F12K2_7; otubain-like deubiquitinase 1
    Summary
    Encodes an otubain-like histone deubiquitinase involved in chromatin modification and regulation of plant gene expression.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See OTLD1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (11699548..11704303, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene Uncharacterized protein family (UPF0497)

    Bibliography

    Interactions

    General gene information

    Miscellaneous features

    • Loc: c11702537-11702406 AT2G27350.uORF1
    NM_001202687.2
    NM_128294.2
    NM_179768.4
    NM_201815.2
    NM_201816.5
    NM_201817.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast  
    located_in cytoplasm PubMed 
    located_in nucleus PubMed 

    General protein information

    Preferred Names
    OTU-like cysteine protease family protein
    NP_001189616.1
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2).
    NP_565648.1
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 2113 Blast hits to 1438 proteins in 217 species: Archae - 0; Bacteria - 20; Metazoa - 656; Fungi - 244; Plants - 357; Viruses - 15; Other Eukaryotes - 821 (source: NCBI BLink).
    NP_850099.1
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 2113 Blast hits to 1438 proteins in 217 species: Archae - 0; Bacteria - 20; Metazoa - 656; Fungi - 244; Plants - 357; Viruses - 15; Other Eukaryotes - 821 (source: NCBI BLink).
    NP_973544.1
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973545.2
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_973546.2
    • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 1771 Blast hits to 1440 proteins in 217 species: Archae - 0; Bacteria - 18; Metazoa - 660; Fungi - 248; Plants - 357; Viruses - 15; Other Eukaryotes - 473 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11699548..11704303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179768.4 → NP_850099.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850099.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IFS7, Q93Z76, Q9XIP2
      UniProtKB/TrEMBL
      A0A178VTT9, A0A654EWN6
      Conserved Domains (1) summary
      cl19932
      Location:224 → 333
      OTU; OTU-like cysteine protease
    2. NM_201816.5 → NP_973545.2  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973545.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVD1
      Conserved Domains (1) summary
      cl19932
      Location:224 → 333
      OTU; OTU-like cysteine protease
    3. NM_201817.2 → NP_973546.2  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973546.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVD1
      Conserved Domains (1) summary
      cl19932
      Location:224 → 333
      OTU; OTU-like cysteine protease
    4. NM_201815.2 → NP_973544.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973544.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVD1
      Conserved Domains (1) summary
      cl19932
      Location:224 → 333
      OTU; OTU-like cysteine protease
    5. NM_128294.2 → NP_565648.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565648.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IFS7, Q93Z76, Q9XIP2
      UniProtKB/TrEMBL
      A0A178VTT9, A0A654EWN6
      Conserved Domains (1) summary
      cl19932
      Location:224 → 333
      OTU; OTU-like cysteine protease
    6. NM_001202687.2 → NP_001189616.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189616.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVD1
      Conserved Domains (1) summary
      cl19932
      Location:224 → 333
      OTU; OTU-like cysteine protease
    External link. Please review our privacy policy.