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    GC1 golgin Putative 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816514, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GC1
    Official Full Name
    golgin Putative 1
    Primary source
    TAIR:AT2G19950
    Locus tag
    AT2G19950
    See related
    Araport:AT2G19950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F22.2; F6F22_2; golgin candidate 1
    Summary
    This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein.
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    Genomic context

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    See GC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Sequence:
    Chromosome: 2; NC_003071.7 (8615971..8621774, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-dependent RNA polymerase family protein Neighboring gene RNA-dependent RNA polymerase family protein Neighboring gene Putative N-acetyl-gamma-glutamyl-phosphate reductase Neighboring gene hAT family dimerization domain-containing protein Neighboring gene ncRNA Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Living on the edge: the role of Atgolgin-84A at the plant ER-Golgi interface. Vieira V, et al. J Microsc, 2020 Nov. PMID 32700322
    2. Localization and domain characterization of Arabidopsis golgin candidates. Latijnhouwers M, et al. J Exp Bot, 2007. PMID 18182439
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Living on the edge: the role of Atgolgin-84A at the plant ER-Golgi interface.
      Title: Living on the edge: the role of Atgolgin-84A at the plant ER-Golgi interface.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001202627.2
    NM_127553.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    golgin Putative 1
    NP_001189556.1
    • golgin candidate 1 (GC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Golgin subfamily A member 5 (InterPro:IPR019177); BEST Arabidopsis thaliana protein match is: golgin candidate 2 (TAIR:AT1G18190.1).
    NP_179585.3
    • golgin candidate 1 (GC1); CONTAINS InterPro DOMAIN/s: Golgin subfamily A member 5 (InterPro:IPR019177); BEST Arabidopsis thaliana protein match is: golgin candidate 2 (TAIR:AT1G18190.1); Has 72479 Blast hits to 43598 proteins in 2837 species: Archae - 714; Bacteria - 12764; Metazoa - 33819; Fungi - 6786; Plants - 4969; Viruses - 184; Other Eukaryotes - 13243 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8615971..8621774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202627.2 → NP_001189556.1  golgin Putative 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189556.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUM2, A0A5S9WZG0, A0A654EUF0
      Conserved Domains (2) summary
      COG1196
      Location:250 → 613
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09787
      Location:472 → 685
      Golgin_A5; Golgin subfamily A member 5

    2. NM_127553.3 → NP_179585.3  golgin Putative 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179585.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B0F9L5, Q0WNI1, Q6NMI2, Q8S8N9
      UniProtKB/TrEMBL
      A0A654EUF0
      Conserved Domains (1) summary
      pfam09787
      Location:183 → 679
      Golgin_A5; Golgin subfamily A member 5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8N9.2

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