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    SK16 SKP1-like 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814848, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK16
    Official Full Name
    SKP1-like 16
    Primary source
    TAIR:AT2G03190
    Locus tag
    AT2G03190
    See related
    Araport:AT2G03190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK16; SKP1-like 16; T18E12.14; T18E12_14
    Summary
    one of SKP1 homologs. Gene is expressed specifically in the silique.
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    Genomic context

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    See SK16 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (964214..964901)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SKP1-like 14 Neighboring gene uncharacterized protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene fucosyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
    2. An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. Gou M, et al. Plant J, 2009 Dec. PMID 19682297
    3. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. Marrocco K, et al. Plant J, 2006 Feb. PMID 16412087
    4. Expression and interaction analysis of Arabidopsis Skp1-related genes. Takahashi N, et al. Plant Cell Physiol, 2004 Jan. PMID 14749489
    5. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Gagne JM, et al. Proc Natl Acad Sci U S A, 2002 Aug 20. PMID 12169662, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 16
    NP_565297.1
    • SKP1-like 16 (SK16); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 14 (TAIR:AT2G03170.1); Has 1394 Blast hits to 1390 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 520; Fungi - 175; Plants - 526; Viruses - 11; Other Eukaryotes - 162 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      964214..964901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126370.2 → NP_565297.1  SKP1-like 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565297.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81055
      UniProtKB/TrEMBL
      A0A5S9WWR9
      Conserved Domains (3) summary
      smart00512
      Location:3 → 117
      Skp1; Found in Skp1 protein family
      COG5201
      Location:3 → 165
      SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
      pfam01466
      Location:92 → 165
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81055.1

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