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    LOC8080953 probable cellulose synthase A catalytic subunit 1 [UDP-forming] [ Sorghum bicolor (sorghum) ]

    Gene ID: 8080953, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8080953
    Gene description
    probable cellulose synthase A catalytic subunit 1 [UDP-forming]
    Locus tag
    SORBI_3009G063400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8080953 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (6745377..6751794, complement)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g34160 Neighboring gene uncharacterized LOC8072708 Neighboring gene uncharacterized LOC110430044 Neighboring gene wall-associated receptor kinase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cellulose synthase A catalytic subunit 1 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      6745377..6751794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002440649.2 → XP_002440694.1  probable cellulose synthase A catalytic subunit 1 [UDP-forming]

      See identical proteins and their annotated locations for XP_002440694.1

      UniProtKB/TrEMBL
      A0A921U3S3, C5Z153
      Conserved Domains (3) summary
      PLN02400
      Location:1 → 1073
      PLN02400; cellulose synthase
      pfam14569
      Location:34 → 99
      zf-UDP; Zinc-binding RING-finger
      cl11394
      Location:505 → 822
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version

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