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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001284403.2 → NP_001271332.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks 3 consecutive exons compared to variant 1, however, it maintains the reading frame and encodes a shorter isoform (2) missing an internal protein segment compared to isoform 1.
- Source sequence(s)
-
AC026406, AC093278, AI798903, AK056761, AK298750, DC393817
- Consensus CDS
-
CCDS68891.1
- UniProtKB/Swiss-Prot
-
Q8WV60
- UniProtKB/TrEMBL
-
B3KPU6
- Related
- ENSP00000427349.1, ENST00000503868.5
-
NM_001284404.2 → NP_001271333.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform 3
See identical proteins and their annotated locations for NP_001271333.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks 2 consecutive exons, which results in a frame-shift and translation initiation from an alternative start codon compared to variant 1. The resulting shorter isoform (3) has a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC026406, AC093278, AI798903, AK056761, AK303639, DC393817
- Consensus CDS
-
CCDS68892.1
- UniProtKB/TrEMBL
-
D6RGK0
- Related
- ENSP00000444772.1, ENST00000536805.5
-
NM_001284405.2 → NP_001271334.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the mid-coding region and initiates translation from an in-frame downstream start codon compared to variant 1. The resulting isoform (4) has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC026406, AC093278, AI798903, AK056761, AK303776
- Consensus CDS
-
CCDS75258.1
- UniProtKB/TrEMBL
- D6RGK0, F6S289
- Related
- ENSP00000438810.2, ENST00000543322.5
-
NM_024754.5 → NP_079030.3 pentatricopeptide repeat-containing protein 2, mitochondrial isoform 1
See identical proteins and their annotated locations for NP_079030.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC026406, AC093278, AI798903, AK056761, DC393817
- Consensus CDS
-
CCDS4014.2
- UniProtKB/Swiss-Prot
- B7Z5D0, B7Z8L7, E9PFV7, Q6IA65, Q8WV60, Q9H9R0
- Related
- ENSP00000370013.4, ENST00000380639.10
- Conserved Domains (2) summary
-
- sd00004
Location:165 → 194
- PPR; PPR repeat [structural motif]
- pfam10037
Location:103 → 354
- MRP-S27; Mitochondrial 28S ribosomal protein S27
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
72320373..72368395
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005248601.3 → XP_005248658.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1
- Conserved Domains (2) summary
-
- sd00004
Location:165 → 194
- PPR; PPR repeat [structural motif]
- pfam10037
Location:103 → 212
- MRP-S27; Mitochondrial 28S ribosomal protein S27
-
XM_047417743.1 → XP_047273699.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X2
- UniProtKB/TrEMBL
- B3KPU6, D6RGK0
-
XM_047417745.1 → XP_047273701.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X4
- UniProtKB/TrEMBL
- D6RGK0, F6S289
-
XM_047417744.1 → XP_047273700.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X3
- UniProtKB/TrEMBL
-
D6RGK0
- Related
- ENSP00000426295.2, ENST00000510676.6
RNA
-
XR_948298.3 RNA Sequence
-
XR_241790.6 RNA Sequence
-
XR_007058635.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
72801543..72849569
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054353496.1 → XP_054209471.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1
-
XM_054353497.1 → XP_054209472.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X2
- UniProtKB/TrEMBL
- B3KPU6, D6RGK0
-
XM_054353499.1 → XP_054209474.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X4
- UniProtKB/TrEMBL
- D6RGK0, F6S289
-
XM_054353498.1 → XP_054209473.1 pentatricopeptide repeat-containing protein 2, mitochondrial isoform X3
- UniProtKB/TrEMBL
-
D6RGK0
RNA
-
XR_008487162.1 RNA Sequence
-
XR_008487161.1 RNA Sequence
-
XR_008487163.1 RNA Sequence