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    LOC778837 macoilin [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778837, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC778837
    Gene description
    macoilin
    See related
    Ensembl:ENSCING00000014982
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See LOC778837 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190397.2 (539189..551832)

    NW_004190397.2Genomic Context describing neighboring genes Neighboring gene FSD1-like protein Neighboring gene uncharacterized LOC100186787 Neighboring gene uncharacterized LOC113475006 Neighboring gene uncharacterized LOC108950247 Neighboring gene conserved oligomeric Golgi complex subunit 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004190397 Unplaced Scaffold Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in neuronal signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in rough endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    macoilin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078419.1 → NP_001071887.1  macoilin

      See identical proteins and their annotated locations for NP_001071887.1

      Status: PROVISIONAL

      Source sequence(s)
      AY845033
      UniProtKB/TrEMBL
      A0A1W2VS38, F6UVK0, Q2TLX8
      Related
      ENSCINP00000026854, ENSCINT00000027100
      Conserved Domains (2) summary
      pfam09726
      Location:2 → 680
      Macoilin; Transmembrane protein
      cl23720
      Location:405 → 485
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NW_004190397.2 Reference KH Primary Assembly

      Range
      539189..551832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials