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    SYMRK symbiosis receptor-like kinase [ Solanum lycopersicum (tomato) ]

    Gene ID: 778236, updated on 1-Nov-2024

    Summary

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    Gene symbol
    SYMRK
    Gene description
    symbiosis receptor-like kinase
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See SYMRK in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (69167236..69173373, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (53487031..53493168, complement)

    Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g23880-like Neighboring gene probable cytosolic oligopeptidase A Neighboring gene uncharacterized LOC101253848 Neighboring gene uncharacterized LOC104645681

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Advance of plant symbiosis receptor-like kinase in nonlegumes]. Zhu XC, et al. Sheng Wu Gong Cheng Xue Bao, 2007 May. PMID 17577976
    2. Functional adaptation of a plant receptor-kinase paved the way for the evolution of intracellular root symbioses with bacteria. Markmann K, et al. PLoS Biol, 2008 Mar 4. PMID 18318603, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    symbiosis receptor-like kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247940.1 → NP_001234869.1  symbiosis receptor-like kinase precursor

      See identical proteins and their annotated locations for NP_001234869.1

      Status: PROVISIONAL

      Source sequence(s)
      AY935266
      UniProtKB/TrEMBL
      A0A3Q7FCU6, Q2TDW9
      Conserved Domains (3) summary
      cd14066
      Location:581 → 848
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00069
      Location:578 → 799
      Pkinase; Protein kinase domain
      pfam12819
      Location:35 → 348
      Malectin_like; Carbohydrate-binding protein of the ER

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

      Range
      69167236..69173373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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