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    tssF type VI secretion system baseplate subunit TssF [ Shigella boydii ]

    Gene ID: 75205533, updated on 3-Dec-2024

    Summary

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    Gene symbol
    tssF
    Gene description
    type VI secretion system baseplate subunit TssF
    Locus tag
    CEH00_RS19600
    Gene type
    protein coding
    Organism
    Shigella boydii (strain: ESBL-W3-2, nat-host: Homo sapiens)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
    Old locus tag
    CEH00_19625
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    Genomic context

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    NZ_NIYS01000123.1Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene type VI secretion system lipoprotein TssJ Neighboring gene type VI secretion system-associated FHA domain protein TagH Neighboring gene type VI secretion system baseplate subunit TssG Neighboring gene type VI secretion system baseplate subunit TssE Neighboring gene type VI secretion system contractile sheath large subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_NIYS01000123.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system. Pukatzki S, et al. Proc Natl Acad Sci U S A, 2006 Jan 31. PMID 16432199, Free PMC Article
    2. In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages. Shalom G, et al. Microbiology (Reading), 2007 Aug. PMID 17660433
    3. A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Mougous JD, et al. Science, 2006 Jun 9. PMID 16763151, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    type VI secretion system baseplate subunit TssF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_NIYS01000123.1 Reference assembly

      Range
      7101..8951 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_000393844.1 MULTISPECIES: type VI secretion system baseplate subunit TssF [Gammaproteobacteria]

      See identical proteins and their annotated locations for WP_000393844.1

      UniProtKB/TrEMBL
      A0A066REE2, A0A0H3JC88, A0A0H3PIB8, A0A6H2GI56, A0A6M0JQ14, A0A7M3S2F0, A0A7U9J1M4, A0A7Z1EQG1, A0A9P2PWN9, A0A9Q5XYH3, A0A9Q6Z9S3, A0AAD2UG77, A0AAN3M6B0, A0AAN3V1Q4, A0AAN4IMC8, A0AAV3HFS0, E0J658, Q7AHI7, Q8X7U6
      Conserved Domains (1) summary
      COG3519
      Location:12 → 616
      COG3519; Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and vesicular transport]
    Nucleotide Protein
    Heading Accession and Version