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    ptrR putrescine utilization regulator PtrR [ Shigella boydii ]

    Gene ID: 75202146, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ptrR
    Gene description
    putrescine utilization regulator PtrR
    Locus tag
    CEH00_RS01015
    Gene type
    protein coding
    Organism
    Shigella boydii (strain: ESBL-W3-2, nat-host: Homo sapiens)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
    Old locus tag
    CEH00_01015
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    Genomic context

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    NZ_NIYS01000003.1Genomic Context describing neighboring genes Neighboring gene L-arabinose MFS transporter Neighboring gene putative protein YneK Neighboring gene succinate-semialdehyde dehydrogenase Neighboring gene glutaminase B Neighboring gene DUF4186 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_NIYS01000003.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli. Rodionova IA, et al. Sci Rep, 2022 May 4. PMID 35508583, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    putrescine utilization regulator PtrR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_NIYS01000003.1 Reference assembly

      Range
      4843..5724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_000366496.1 MULTISPECIES: putrescine utilization regulator PtrR [Enterobacteriaceae]

      See identical proteins and their annotated locations for WP_000366496.1

      UniProtKB/TrEMBL
      A0A066QBM2, A0A0E0Y0P3, A0A6H2GED3, A0A7U9IYX5, A0A7Z8GH43, A0A9P2IRA3, A0A9Q5UA83, A0AA35F5H0, A0AAD2VBA8, A0AAD2VKI8, A0AAN1S5B7, A0AAP9SGW9, B7L7M6, W1EZM1
      Conserved Domains (2) summary
      cd08442
      Location:90 → 282
      PBP2_YofA_SoxR_like; The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold
      PRK12680
      Location:1 → 172
      PRK12680; LysR family transcriptional regulator
    Nucleotide Protein
    Heading Accession and Version