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    LOC7490928 leucoanthocyanidin dioxygenase [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7490928, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC7490928
    Gene description
    leucoanthocyanidin dioxygenase
    Locus tag
    POPTR_001G113100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7490928 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (9160132..9161885)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (9040530..9042290)

    Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene expansin-A7-like Neighboring gene PGR5-like protein 1A, chloroplastic Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene transcription factor bHLH36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucoanthocyanidin dioxygenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      9160132..9161885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002298045.3 → XP_002298081.1  leucoanthocyanidin dioxygenase

      See identical proteins and their annotated locations for XP_002298081.1

      UniProtKB/TrEMBL
      A9PHZ9, B9GKR6
      Conserved Domains (1) summary
      PLN03178
      Location:4 → 360
      PLN03178; leucoanthocyanidin dioxygenase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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