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    LOC7468584 uncharacterized LOC7468584 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7468584, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC7468584
    Gene description
    uncharacterized LOC7468584
    Locus tag
    POPTR_009G042100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7468584 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (4919118..4920356, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (4891006..4892530, complement)

    Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 1 Neighboring gene probable anion transporter 4, chloroplastic Neighboring gene protein OCTOPUS Neighboring gene uncharacterized LOC7481493

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acyl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC7468584
    Names
    acyl-coenzyme A thioesterase 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      4919118..4920356 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002313360.4 → XP_002313396.1  uncharacterized protein LOC7468584

      See identical proteins and their annotated locations for XP_002313396.1

      UniProtKB/TrEMBL
      B9HP78
      Conserved Domains (1) summary
      cd03443
      Location:42 → 151
      PaaI_thioesterase; PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not ...
    Nucleotide Protein
    Heading Accession and Version

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