U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC7455896 cellulose synthase A catalytic subunit 8 [UDP-forming] [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7455896, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC7455896
    Gene description
    cellulose synthase A catalytic subunit 8 [UDP-forming]
    Locus tag
    POPTR_011G069600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    CesA1A
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC7455896 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (6090232..6097154, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (6493169..6500107, complement)

    Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene SAP-like protein BP-73 Neighboring gene receptor-like protein 51 Neighboring gene uncharacterized LOC7455895 Neighboring gene uncharacterized LOC7463821

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Zhao Y, et al. Plant Physiol, 2014 Feb. PMID 24394777, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cellulose synthase A catalytic subunit 8 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      6090232..6097154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002316779.4 → XP_002316815.1  cellulose synthase A catalytic subunit 8 [UDP-forming]

      See identical proteins and their annotated locations for XP_002316815.1

      UniProtKB/TrEMBL
      B9I1I4
      Conserved Domains (1) summary
      PLN02195
      Location:1 → 978
      PLN02195; cellulose synthase A
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials