U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    NRT2 nitrate transporter [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7450676, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    NRT2
    Gene description
    nitrate transporter
    Locus tag
    THAPS_269274
    Gene type
    protein coding
    RNA name
    nitrate transporter
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NRT2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Sequence:
    Chromosome: 7; NC_012070.1 (1360187..1362070)

    Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene glycerol kinase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_012070.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nitrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nitrite transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nitrate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nitrite transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    nitrate transporter
    XP_002295904.1
    • Strong hits.EST data.

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012070.1 Reference assembly

      Range
      1360187..1362070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002295868.1 → XP_002295904.1  nitrate transporter [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002295904.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B5YNF5
      Conserved Domains (2) summary
      cd06174
      Location:50 → 438
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      PLN00028
      Location:7 → 461
      PLN00028; nitrate transmembrane transporter; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials