polr2l.2 polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa, gene 2 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: polr2l.2provided by Xenbase
Official Full Name: polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa, gene 2provided by Xenbase
Primary source: Xenbase:XB-GENE-5898446
See related: Ensembl:ENSXETG00000002878 AllianceGenome:Xenbase:XB-GENE-5898446
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: rbp10; rpb10; rpabc5; rpb7.6; rpb10beta
Summary: Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and zinc ion binding activity. Predicted to act upstream of or within DNA-templated transcription. Predicted to be part of DNA-directed RNA polymerase complex. Orthologous to human POLR2L (RNA polymerase II, I and III subunit L). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: chromosome: 7

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	7	NC_030683.2 (111020957..111022263, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	7	NC_030683.1 (103150660..103151958, complement)

Chromosome 7 - NC_030683.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-directed 5'-3' RNA polymerase activity	IEA Inferred from Electronic Annotation more info
contributes_to RNA polymerase I activity	IBA Inferred from Biological aspect of Ancestor more info
contributes_to RNA polymerase II activity	IBA Inferred from Biological aspect of Ancestor more info
contributes_to RNA polymerase III activity	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IBA Inferred from Biological aspect of Ancestor more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in tRNA transcription by RNA polymerase III	IBA Inferred from Biological aspect of Ancestor more info
involved_in transcription by RNA polymerase I	IBA Inferred from Biological aspect of Ancestor more info
involved_in transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of DNA-directed RNA polymerase complex	IEA Inferred from Electronic Annotation more info
part_of RNA polymerase I complex	IBA Inferred from Biological aspect of Ancestor more info
part_of RNA polymerase II, core complex	IBA Inferred from Biological aspect of Ancestor more info
part_of RNA polymerase III complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa, gene 2

Names: polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001171594.1 → NP_001165065.1 polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa, gene 2

See identical proteins and their annotated locations for NP_001165065.1

Status: PROVISIONAL

Source sequence(s)

BC135758

UniProtKB/TrEMBL

F7CZ47, Q1ECU1

Conserved Domains (1) summary

pfam01194
Location:1 → 59

RNA_pol_N; RNA polymerases N / 8 kDa subunit