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    arid4b AT-rich interaction domain 4B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 733823, updated on 14-Nov-2024

    Summary

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    Official Symbol
    arid4bprovided by Xenbase
    Official Full Name
    AT-rich interaction domain 4Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1003570
    See related
    Ensembl:ENSXETG00000024651 AllianceGenome:Xenbase:XB-GENE-1003570
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    bcaa; brcaa1; rbp1l1; sap180; rbbp1l1
    Summary
    Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to human ARID4B (AT-rich interaction domain 4B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See arid4b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (55876021..55947247, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (59351872..59424738, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 2 binding protein 2 Neighboring gene translocase of outer mitochondrial membrane 20 homolog Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene tubulin folding cofactor E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 4B
    Names
    AT rich interactive domain 4B (RBP1-like)
    AT rich interactive domain 4b (rbp1 like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      55876021..55947247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002935818.5 → XP_002935864.2  AT-rich interactive domain-containing protein 4B isoform X3

      UniProtKB/TrEMBL
      A0A8J0QRQ9, F6Z1R9
      Conserved Domains (5) summary
      PTZ00341
      Location:431 → 556
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      cd16883
      Location:321 → 412
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:188 → 278
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:20 → 80
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:81 → 137
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins

    2. XM_012963708.3 → XP_012819162.2  AT-rich interactive domain-containing protein 4B isoform X2

      UniProtKB/TrEMBL
      A0A8J0SPM9, F6Z1R9
      Conserved Domains (6) summary
      PTZ00341
      Location:431 → 556
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      cd16883
      Location:321 → 412
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:188 → 278
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:20 → 80
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:81 → 137
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cl28914
      Location:560 → 617
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

    3. XM_004914620.4 → XP_004914677.2  AT-rich interactive domain-containing protein 4B isoform X1

      UniProtKB/TrEMBL
      A0A6I8RAQ8, F6Z1R9
      Related
      ENSXETP00000082062.2, ENSXETT00000088393.2
      Conserved Domains (6) summary
      PTZ00341
      Location:431 → 556
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      cd16883
      Location:321 → 412
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:188 → 278
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:20 → 80
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:81 → 137
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cl28914
      Location:560 → 617
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
    Nucleotide Protein Strain
    Heading Accession and Version

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