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    ybcJ ribosome-associated protein YbcJ [ Edwardsiella piscicida ]

    Gene ID: 72529477, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ybcJ
    Gene description
    ribosome-associated protein YbcJ
    Locus tag
    L1P05_RS12905
    Gene type
    protein coding
    Organism
    Edwardsiella piscicida (strain: 18EpOKYJ, nat-host: Paralichthtys olivaceus (Olive flounder))
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella
    Old locus tag
    L1P05_12905
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    Genomic context

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    NZ_CP090968.1Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD Neighboring gene cysteine--tRNA ligase Neighboring gene peptidylprolyl isomerase B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP090968.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The solution structure of YbcJ from Escherichia coli reveals a recently discovered alphaL motif involved in RNA binding. Volpon L, et al. J Bacteriol, 2003 Jul. PMID 12837795, Free PMC Article
    2. Identification of novel Escherichia coli ribosome-associated proteins using isobaric tags and multidimensional protein identification techniques. Jiang M, et al. J Bacteriol, 2007 May. PMID 17337586, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ribosome-associated protein YbcJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP090968.1 Reference assembly

      Range
      2831833..2832045
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_012849523.1 ribosome-associated protein YbcJ [Edwardsiella piscicida]

      See identical proteins and their annotated locations for WP_012849523.1

      UniProtKB/TrEMBL
      A0A0H3DTD0, A0AAQ3BZZ8, A0AAU8PIQ9
      Conserved Domains (1) summary
      cl09940
      Location:1 → 70
      S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    Nucleotide Protein
    Heading Accession and Version

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