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    PHATRDRAFT_bd387 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7205158, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATRDRAFT_bd387
    Gene description
    hypothetical protein
    Locus tag
    PHATRDRAFT_bd387
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATRDRAFT_bd387 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_002238021.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002238021.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadmium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic cation transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002238021.1 Reference assembly

      Range
      20022..22835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002176169.1 → XP_002176205.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002176205.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7S3R7
      Conserved Domains (4) summary
      COG2217
      Location:24 → 744
      ZntA; Cation transport ATPase [Inorganic ion transport and metabolism]
      COG2608
      Location:33 → 84
      CopZ; Copper chaperone CopZ [Inorganic ion transport and metabolism]
      pfam00122
      Location:186 → 410
      E1-E2_ATPase; E1-E2 ATPase
      pfam12710
      Location:418 → 651
      HAD; haloacid dehalogenase-like hydrolase
    Nucleotide Protein
    Heading Accession and Version

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