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    PHATRDRAFT_bd1631 cell surface receptor protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7205153, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATRDRAFT_bd1631
    Gene description
    cell surface receptor protein
    Locus tag
    PHATRDRAFT_bd1631
    Gene type
    protein coding
    RNA name
    cell surface receptor protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATRDRAFT_bd1631 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    4

    NW_002238031.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002238031.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables guanylate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptide receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cGMP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor guanylyl cyclase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    cell surface receptor protein
    XP_002176266.1
    • contains N-terminal CHASE domain predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides; contains C-terminal Guanylate cyclase domain and 3'5'-cyclic nucleotide phosphodiesterase domain involved in signal transduction; located in plasmamembrane

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002238031.1 Reference assembly

      Range
      2001..5851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002176230.1 → XP_002176266.1  cell surface receptor protein [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002176266.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7S3X6
      Conserved Domains (3) summary
      cd07302
      Location:572 → 755
      CHD; cyclase homology domain
      smart00044
      Location:566 → 730
      CYCc; Adenylyl- / guanylyl cyclase, catalytic domain
      cl21469
      Location:905 → 1147
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
    Nucleotide Protein
    Heading Accession and Version

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