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    ARID1A AT-rich interaction domain 1A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719949, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ARID1Aprovided by VGNC
    Official Full Name
    AT-rich interaction domain 1Aprovided by VGNC
    Primary source
    VGNC:VGNC:69822
    See related
    Ensembl:ENSMMUG00000012697
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ARID1A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (197983146..198069646, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (25530102..25616623)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 18 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene small nucleolar RNA U13 Neighboring gene U7 small nuclear RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 1A
    Names
    AT-rich interactive domain-containing protein 1A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      197983146..198069646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015132119.2 → XP_014987605.2  AT-rich interactive domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A5F8AVI6, F7DX53
      Related
      ENSMMUP00000016675.3, ENSMMUT00000017806.4
      Conserved Domains (4) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam12004
      Location:599 → 888
      DUF3498; Domain of unknown function (DUF3498)
      pfam12031
      Location:1978 → 2233
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
      cd16876
      Location:1021 → 1113
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    2. XM_028837487.1 → XP_028693320.1  AT-rich interactive domain-containing protein 1A isoform X3

      UniProtKB/TrEMBL
      F7DX46
      Related
      ENSMMUP00000058553.2, ENSMMUT00000073589.2
      Conserved Domains (3) summary
      pfam12004
      Location:213 → 502
      DUF3498; Domain of unknown function (DUF3498)
      pfam12031
      Location:1592 → 1847
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
      cd16876
      Location:635 → 727
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    3. XM_015132127.2 → XP_014987613.1  AT-rich interactive domain-containing protein 1A isoform X2

      UniProtKB/TrEMBL
      A0A5F8AVI6
      Related
      ENSMMUP00000081076.1, ENSMMUT00000095150.1
      Conserved Domains (3) summary
      smart00501
      Location:1021 → 1112
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam12004
      Location:599 → 884
      DUF3498; Domain of unknown function (DUF3498)
      pfam12031
      Location:1977 → 2232
      DUF3518; Domain of unknown function (DUF3518)
    Nucleotide Protein
    Heading Accession and Version

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